They will be fine, if they were fertile to begin with. I can't lay my hands on the study at the moment, but experiments have been done with turning eggs at a prescribed interval and with mailing eggs around the country which showed that eggs can withstand a lot more rough treatment that we have historically been led to believe. You want to disturb the eggs as little as possible, just to be safe, and they are more likely to be harmed at the end of incubation rather than the beginning, but as long as you start them out in as close an approximation of how the female laid them as you can, and don't do anything drastic with them as they are incubating, you have nothing to worry about in that regard.
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