I had the same problem with glare when photographing my aquarium. A few things that helped me were 1) taking angled shots so that the flash wasn't head on with the glass.
2) even better...putting the camera on something to stabalize it...a tripod or stack of books. With the flash off, I can get right up to the glass. Of course, the tank is well lit from the lights on the canopy. Maybe setting up a trouble light about the viv would shed some light for you??
3)does your camera have a 'sports' selection for speed? or a rapid burst? both those capture movement well for me.
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