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Linebreeding

It's a tough line to walk sometimes but we're the selective factor for these animals. We have to be the natural selection from traits like head wobble and gazer. I would imagine that many more issues that we can not see happen on a regular basis. If we play banjos too many times we could end up with some wonky snakes.

I guess I'm just interested in how the wonky line gets determined in snakes. At what point does a trait become a no-no?
 
Traits are the result of genes. Line bred traits are usually controlled by more than one gene, or one gene that does many things. On top of that there is how much a particular gene is expressed.
 
I am not aware of any evidence that the problems you mention above have anything to do with inbreeding. In fact, I am aware of efforts that have been made to outcross in order to eliminate those negative traits, but they have not been successful. It seems, from what I've seen at least, that these problems are actually part of the genes that cause the morph, and so they'll be present regardless of how much or how little inbreeding has been done.

Reputable breeders do outcross their animals, but the only way to fix recessive genetic mutations that create the morphs is inbreeding them first. Once you have a line established, then you can add allelic diversity back to counter the diversity lost by the initial inbreeding. You can get away with less inbreeding with dominant mutations, but the temptation there is to produce "Super" forms which carry two of the dominant alleles instead of one, and again the only way to accomplish that is inbreeding. In some cases it may be the morph alleles causing the problem directly, or it may be another gene closely linked to the mutant allele, as seems to be the case in spiders with wobble. Bloodred corns were selectively linebred to enhance the color, which also resulted in smaller, less hardy hatchlings who often refused food.

Some people argue that spiders shouldn't be bred because of the wobble. That's a valid argument, although many people feel that wobbles, especially the milder ones, are not an issue because it doesn't seem to have a negative effect on the snake. However, saying the wobble comes from inbreeding makes no sense based on my knowledge both of the spider morph in particular and how inbreeding problems work in general.

The stargazer gene in corns is totally different. Although it seems to have originally been found in sunkissed lines, it is possible to totally eliminate it by outcrossing and test breeding and eliminating carriers of the defective gene. At least as far as I am aware; I haven't done it personally. I guarantee you, if the wobble could be eliminated from spiders or the other defects you mention could be eliminated from the other lines as easily as stargazer is eliminated in corns, there would be LOTS of BP breeders working hard on doing just that.

I said it was analogous, and meant it in the sense that both impact the snake's movements and orientation, and both are heritable. Stargazer appears to be a recessive allele, while the precise cause of wobble is unknown.

So again, I'd like to see specific examples or other evidence of BP breeders utilizing "really aggressive inbreeding" that has been "degrading the quality and health of the animals", if you have any. I'm not saying it isn't out there. I'm just not aware of it, and if there is evidence of this, I'd sure like to know about it.

A lot of what I have heard/read is anecdotal, and folks are frequently unwilling to throw specific individuals under the bus. Brian Barczyk I believe touched on it in Reptiles magazine earlier this year, I have read an interview from Mike Willbanks discussing the issue in general terms, and I like what the folks at VMS have to say about inbreeding here.

I think the reason there has been a faster rush to create bigger multigene combos in BPs as opposed to corns is partly because they are more popular right now. But a lot of it has to do with the fact that you can create multigene combos with a larger number of genes in each and every generation, due to the large number of dom and co-dom morphs. In corns, it is slowed down a lot by the need to alternate generations: one generation of hets, and then one generation of visuals. And, the need to breed hets together to get visuals is where inbreeding usually occurs, so I still think inbreeding is probably more common in corns than in BPs.

Based on your most recent post, Guruofchem, it seems like you are talking about unscrupulous breeding in general, rather than careless inbreeding in particular. On that point, I think we are in 100% agreement. That kind of breeder is scum. And yes, there definitely are some of those in the BP world.

Inbreeding may be more common in corns, as almost all the available alleles are recessives, but plenty of the foundation genes in many BP morphs depend on recessive traits - albino, hypo, patternless, piebald, clown, and multiple lines of axanthic are some of the most widely used, and would require the same inbreeding practices to fix the trait in a particular line. Also keep in mind that the gene pool for corns is much broader here in the US than can be claimed for ball pythons, so BPs are starting from something of a genetic bottleneck to begin with.

Anything I've said about irresponsible linebreeding has certainly been done by someone working with any reptile species, but I pointed out balls because of several factors mentioned in my 2nd post - there is potentially more money to be made in balls, investment cost in high quality morphs is higher, and thus there is more incentive to cut corners where breeding stock is concerned and linebreed more than is healthy to get the greatest possible number of desirable offspring in the least possible time. I have heard the issue raised more openly and more commonly regarding balls, which tends to indicate the issue is either more widespread or more problematic or both. Given the much shorter duration of ball python morph development, I would be shocked if more problems than are currently seen don't crop up in the near future - I hope it isn't the case for the sake of the animals, but that's not the way to bet...
 
Where are you getting this info?

Ball pythons are one of the most un-bottle necked species out there. Fresh imports are arriving yearly and breeders have a constant steady access to new blood with ease. Bloodlines are swapped around constantly to keep things fresh. I know this from first hand experience with many different breeders, from industry leaders to small time hobbyists.

People are doing that to proactively prevent things like duck-bill from ever happening again.

You want genetic bottleneck? Leopard geckos. That is a time bomb waiting to happen. There is no new imports or blood lines available.

No one is under-the-busing anyone, because it is NOT an epidemic. Barczyk is putting information out there so people know the potential dangers and are informed about it.

Yes people inbreed balls just the same as any other reptiles being bred for profit, but it is not anything close to what you make it out to be. Not by a long shot.

It's the "back yard" schmucks that are doing the shady stuff. Same with all animals.

Those schmucks are the unethical blight that breed kinked, deformed, mutated, and otherwise unfit animals purely for profit. They are present in all industries, mammal, reptile, and others.



Dave, with regards to star gazing, I'm talking about the people who never even attempt to test to lines in any manner or people who sell known gazer carriers without disclosure.
 
lol Dave, sorry for my overzealous use of the word "industry". Perhaps "business" would be better? Or maybe "hobby" .... "industry" sounds so fancy though ... ; )
I'm glad to see so many of the more senior members chiming in (not that I don't value the opinions of those who've been here for 5 minutes like myself). I had hoped to hear about linebreeding from someone who has been breeding corns for a long while. : )
BloodyBaroness and Guruofchem, who's to say the corn snake, erm .... hobby .... isn't dealing with a little bit of a bottleneck? I mean, morphs like okeetee and Miami are derived from wild-caught specimens, and particularly Palmetto, so who's to say that the wild-caught individuals themselves aren't the result of linebreeding? As everyone has no doubt gathered, snakes do not have familial attachments and have no compunctions about mating with whomever happens to cross their path during the breeding season, be they related or not.
(I don't know the full history of most morphs so feel free to correct the following): Suppose the Miami morph started with a single snake (like Palmetto) that bred and then re-bred with one of its progeny, who then created more little Miamis, etc. Wouldn't the Miami line, then, be the result of linebreeding, and therefore all captive-bred Miamis would be related? I know this is unlikely, but it COULD have happened - after all, aren't we seeing almost the exact same thing happening right now with Palmettos?
*** On a side note, am I the only one that thinks Palmettos will not be as hardy as some other corn morphs in the future, since they are all derived from a single snake? Even though SMR is doing a great job keeping the hobby from going bonkers with the buy-n-breed bit?

-- Kaifyre
 
And Dave, I think I have a theory for your question about stargazer. (Take it well salted, since I'm obviously a paragon of snake breeding). I would think that, given a SGxSG cross, yes, the result would be 100% SG .... CARRIER. Maybe not all (or none) will show the trait, but since the trait is there, in the line, the progeny have the ability to pass the gene on to their progeny, and so forth. Of course, thinking this way opens up a rather large can of worms, mainly: If you have SGxSG = 100% SGxnon-SG and then the resulting offspring are never again bred to another gazer carrier .... at what point can we say the line is gazer-free? If the offspring are carriers but don't show, are they considered "gazer free"?
I know that last question was brought up a few months ago in regards to hybrid corns (yes, I know, here we go AGAIN), but I think it applies to stargazer as well.

-- Kaifyre
 
lol Dave, sorry for my overzealous use of the word "industry". Perhaps "business" would be better? Or maybe "hobby" .... "industry" sounds so fancy though ... ; )
I'm glad to see so many of the more senior members chiming in (not that I don't value the opinions of those who've been here for 5 minutes like myself). I had hoped to hear about linebreeding from someone who has been breeding corns for a long while. : )
BloodyBaroness and Guruofchem, who's to say the corn snake, erm .... hobby .... isn't dealing with a little bit of a bottleneck? I mean, morphs like okeetee and Miami are derived from wild-caught specimens, and particularly Palmetto, so who's to say that the wild-caught individuals themselves aren't the result of linebreeding? As everyone has no doubt gathered, snakes do not have familial attachments and have no compunctions about mating with whomever happens to cross their path during the breeding season, be they related or not.
(I don't know the full history of most morphs so feel free to correct the following): Suppose the Miami morph started with a single snake (like Palmetto) that bred and then re-bred with one of its progeny, who then created more little Miamis, etc. Wouldn't the Miami line, then, be the result of linebreeding, and therefore all captive-bred Miamis would be related? I know this is unlikely, but it COULD have happened - after all, aren't we seeing almost the exact same thing happening right now with Palmettos?
*** On a side note, am I the only one that thinks Palmettos will not be as hardy as some other corn morphs in the future, since they are all derived from a single snake? Even though SMR is doing a great job keeping the hobby from going bonkers with the buy-n-breed bit?

-- Kaifyre
Why should any line-bred animal necessarily be less hardy? If the original animals don't carry deleterious genes, line breeding them actually reduces the chances of them occuring.
In the case you highlight, for example, let's say an isolated population of wild corns have huge black borders. They are isolated by geography because they are in a valley surrounded by dry desert country. Over many generations, they have bred, and any less fit corns haven't survived, they'd failed to thrive, been picked off by predators, failed to breed. The natural selection process will weed out the weak. The fittest corns will increase, and because they carry incidentally the genetics for the huge black borders over time more and more of those corns in that area will have the borders.
In contrast, a breeder gets a corn hatchling with unusually large borders. They decide they want to perpetuate the trait and breed the original corn, then breed it back to its offspring and so on. Some of the offspring are smaller at hatching and slow to feed. Instead of culling them the breeder tries every trick in the book to get them to survive. Because they are so pretty and unusual, they command a high price and other breeders do the same thing. By ignoring the overall fitness of the animals in favour of the desired look, that particular line of corns becomes known for being less hardy. In order to improve their health, outcrossing and recovering the look by carefully selective linebreeding is necessary otherwise the weakness and lack of vigour will perpetuate.
What I mean by this is that artificially raising any animal carries a responsability to the overall fitness. Selecting for health and vigour as well as the colour or patterning is key to avoiding problems in the future. Kathy Loves Okeetees, Carols Miamis are just 2 of the outstanding linebred corn morphs I can think of straight away, where there is no inherent genetic problems in their stock. They have selected and bred superb examples well-known both for the look and for the health of their animals.
 
BloodyBaroness and Guruofchem, who's to say the corn snake, erm .... hobby .... isn't dealing with a little bit of a bottleneck?

Because it's not. I'm sensing that you don't understand how that works.

On a side note, am I the only one that thinks Palmettos will not be as hardy as some other corn morphs in the future, since they are all derived from a single snake? Even though SMR is doing a great job keeping the hobby from going bonkers with the buy-n-breed bit?

Most all morphs in existence now only derived from a single animal. Palmetto is no different from any of the other morphs.

The first albino was one animal, the first anery was one animal. Most traits/genes in any dog/cat/horse/reptile all stem from one single animal being different. Breeders identify the different animal and breeding trails begin. That how it works with every species.

The general public is not going to be privy to every play by play breeding, but I assure you the process here is no different that propagation of any other morph that has been discovered in the history of captive breeding for morphs.
 
I would think that, given a SGxSG cross, yes, the result would be 100% SG .... CARRIER. Maybe not all (or none) will show the trait, but since the trait is there, in the line, the progeny have the ability to pass the gene on to their progeny, and so forth.

-- Kaifyre

You would be wrong, actually. This sort of pairing has been done to prove the trait simple recessive. All the offspring of gazer x gazer are gazers. Saying they wouldn't show the trait is like saying an amel bred to an amel will makes a bunch of normal babies.
 
Linebreeding does not guarantee that animals will be less hardy or more prone to genetic disease, but irresponsible linebreeding increases the likelihood of bad outcomes for the animal. As Autumn pointed out, it is necessary to a degree in establishing a group of animals who are homozygous for the desired trait (assuming it's recessive, as almost all corn morph alleles are). It's what happens after those initial backcrosses that really makes the difference.

Ideally you would breed those morphs out to other, unrelated snakes to introduce the morph allele into a broader population; this is what Kaifyre's "hobby" breeders would likely do, as they are looking out for the health of their animals first and foremost. This also means fewer of the animals will be initially available, as establishing a population of hets means no visual morphs for at least one extra generation. The "industry" breeder, however, is less likely to do so, as he or she might want to cash in before the morph becomes more common and prices drop; the temptation to continue to inbreed, thus guaranteeing a steady supply and higher numbers of the morph, would be significant.

In looking at how SMR is handling the palmettos, I'd have to say that a high level of responsibility is being shown. The number of snakes being released is small, and though the prices are high as a result, that leads me to believe that concern for the health of the animals outweighs profit motive. They are still making money, but in a way that considers the animals' welfare. We as consumers might be happier if the morph were more available and less expensive, but I'd rather see the gene and the snakes carrying it handled the right way...
 
Ideally you would breed those morphs out to other, unrelated snakes to introduce the morph allele into a broader population; this is what Kaifyre's "hobby" breeders would likely do, as they are looking out for the health of their animals first and foremost. This also means fewer of the animals will be initially available, as establishing a population of hets means no visual morphs for at least one extra generation. The "industry" breeder, however, is less likely to do so, as he or she might want to cash in before the morph becomes more common and prices drop; the temptation to continue to inbreed, thus guaranteeing a steady supply and higher numbers of the morph, would be significant.

That is simply not true, or at least poorly worded.

The, as you call them, "industry" are not the villains here.

Let's look at the tessera gene.

The big name breeders, "industry," attempted to control the market flow with pricing and controlled breeding.

Once that morph was in the hands of "hobbyist" breeders, they bred it to every snake that would mate with it in a attempt to cash in fast.

The tessera market has completely crashed in record time because of overbreeding for greed.

Granted it's also a dominant gene, but smart breeding could have kept it from bottoming out and proliferating the market so fast.

Also where on earth are you getting your perceived scale of this inbreeding problem? I would really like to see some evidence of this. I don't think you fully understand the process or something. It makes no sense.
 
Horses and dogs still have rampant line breeding and as a whole their populations are far more inbred than our corn snakes what with champions being bred to the most females, limiting the gene pool further with each generation. I've seen some pedigrees of horses and dogs. The looping back to grandfathers and aunts and cousins is astounding.

Most cases here are a simple brother-sister or parent-offspring. Just one generation of the inbreeding because the trait we're seeking to fix is a simple recessive trait.

I have 2 true line breeding projects in the work. The first project, my sweetcorns, will be much easier to outcross into as I am looking purely at temperament. The second, however, is to create black/near black corns with my near-black pewter female as the foundation. I hope to outcross every few generations, but finding a charcoal or pewter that wouldn't set me back entirely is going to be difficult. Non or difficult feeders, and kinked animals, will not be used for breeding. This will help ensure the continued health of the line.

I love that your working this sweetcorn line. Absolutely love it. The near black or black corn line.... interesting as well. I wish you luck with both of these projects. It can be very hard to stabilize and improve on traits one is after.
 
Let's look at the tessera gene.

The big name breeders, "industry," attempted to control the market flow with pricing and controlled breeding.

Once that morph was in the hands of "hobbyist" breeders, they bred it to every snake that would mate with it in a attempt to cash in fast.

The tessera market has completely crashed in record time because of overbreeding for greed.

Granted it's also a dominant gene, but smart breeding could have kept it from bottoming out and proliferating the market so fast.

Also where on earth are you getting your perceived scale of this inbreeding problem? I would really like to see some evidence of this. I don't think you fully understand the process or something. It makes no sense.

What is your thoughts about the Palmetto? Such as keeping it smart breeding so it is not overboard with bottoms that market.
 
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